We introduce MADna, a sequence-dependent coarse-grained model of double-stranded DNA (dsDNA), where each nucleotide ... the persistence length, and the helical pitch. Overall, for the inspected ...

National Institute of Advanced Industrial Science and Technology (AIST), Ikeda, Osaka 563-8577, Japan, and Graduate School of Science and Technology, Kobe University, Nada Ku, Kobe, Hyogo 657-8501, ...